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complex
SYNOPSIS
complex -sequence seqall -lwin integer -step integer -jmin integer
-jmax integer -omnia toggle -sim integer -freq boolean
-print boolean -outfile outfile -ujtablefile outfile
-outseq seqoutall
complex -help
DESCRIPTION
complex is a command line program from EMBOSS ("the European Molecular
Biology Open Software Suite"). It is part of the "Nucleic:Composition"
command group(s).
OPTIONS
Input section
-sequence seqall
-lwin integer
Default value: 100
-step integer
Displacement of the window over the sequence Default value: 5
-jmin integer
Default value: 4
-jmax integer
Default value: 6
Advanced section
-omnia toggle
Calculate over a set of sequences Default value: N
-sim integer
Calculate the linguistic complexity by comparison with a number of
simulations having a uniform distribution of bases
-freq boolean
Execute the simulation of a sequence based on the base frequency of
the original sequence Default value: N
Output section
-print boolean
Generate a file named UjTable containing the values of Uj for each
word j in the real sequence(s) and in any simulated sequences
Default value: N
-outfile outfile
-ujtablefile outfile
Default value: complex.ujtable
COPYRIGHT
This manual page was autogenerated from an Ajax Control Definition of
the EMBOSS package. It can be redistributed under the same terms as
EMBOSS itself.
EMBOSS 6.3.1 07/20/2010 COMPLEX(1e)