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Command:

complex

SYNOPSIS

       complex -sequence seqall -lwin integer -step integer -jmin integer
               -jmax integer -omnia toggle -sim integer -freq boolean
               -print boolean -outfile outfile -ujtablefile outfile
               -outseq seqoutall

       complex -help

DESCRIPTION

       complex is a command line program from EMBOSS ("the European Molecular
       Biology Open Software Suite"). It is part of the "Nucleic:Composition"
       command group(s).

OPTIONS

   Input section
       -sequence seqall

       -lwin integer
           Default value: 100

       -step integer
           Displacement of the window over the sequence Default value: 5

       -jmin integer
           Default value: 4

       -jmax integer
           Default value: 6

   Advanced section
       -omnia toggle
           Calculate over a set of sequences Default value: N

       -sim integer
           Calculate the linguistic complexity by comparison with a number of
           simulations having a uniform distribution of bases

       -freq boolean
           Execute the simulation of a sequence based on the base frequency of
           the original sequence Default value: N

   Output section
       -print boolean
           Generate a file named UjTable containing the values of Uj for each
           word j in the real sequence(s) and in any simulated sequences
           Default value: N

       -outfile outfile

       -ujtablefile outfile
           Default value: complex.ujtable

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of
       the EMBOSS package. It can be redistributed under the same terms as
       EMBOSS itself.

EMBOSS 6.3.1 07/20/2010 COMPLEX(1e)